卜德超，男，中國科學院大學專職教師。中國科學院計算技術研究所副研究員 。
基本介紹
人物經歷,教育背景,工作經歷,研究方向,主要成就,專利與獎勵,出版信息,所獲榮譽,社會任職,
人物經歷
教育背景
2011-09--2015-06 中國科學院計算技術研究所 博士
2009-09--2011-06 中國科學院計算技術研究所 碩士
2005-09--2009-07 山東大學 學士
工作經歷
2021年9月 — 今：中科院計算所，副研究員
2015年7月 — 2021年8月：中科院計算所，助理研究員
研究方向
主要成就
專利與獎勵
專利成果
[1] 任菲, 羅堅誠, 劉志勇, 劉玉東, 張弘, 卜德超. 基於病理圖像的TMB分類方法、系統及TMB分析裝置. CN: CN110866893B, 2021-04-06.
出版信息
發表論文
[1] Zhang, Yuwei, Bu, Dechao, Huo, Peipei, Wang, Zhihao, Rong, Hao, Li, Yanguo, Liu, Jingjia, Ye, Meng, Wu, Yang, Jiang, Zheng, Liao, Qi, Zhao, Yi. ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W459-W468, http://dx.doi.org/10.1093/nar/gkab435.
[2] Bu, Dechao, Luo, Haitao, Huo, Peipei, Wang, Zhihao, Zhang, Shan, He, Zihao, Wu, Yang, Zhao, Lianhe, Liu, Jingjia, Guo, Jincheng, Fang, Shuangsang, Cao, Wanchen, Yi, Lan, Zhao, Yi, Kong, Lei. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W317-W325, http://dx.doi.org/10.1093/nar/gkab447.
[3] Ning, Junya, Ye, Yingnan, Bu, Dechao, Zhao, Gang, Song, Tianqiang, Liu, Pengpeng, Yu, Wenwen, Wang, Hailong, Li, Hui, Ren, Xiubao, Ying, Guoguang, Zhao, Yi, Yu, Jinpu. Imbalance of TGF-beta 1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness. MOLECULAR THERAPY[J]. 2021, 29(6): 2067-2087, http://dx.doi.org/10.1016/j.ymthe.2021.02.016.
[4] Fang, ShuangSang, Dong, Lei, Liu, Liu, Guo, JinCheng, Zhao, LianHe, Zhang, JiaYuan, Bu, DeChao, Liu, XinKui, Huo, PeiPei, Cao, WanChen, Dong, QiongYe, Wu, JiaRui, Zeng, Xiaoxi, Wu, Yang, Zhao, Yi. HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D1197-D1206, http://dx.doi.org/10.1093/nar/gkaa1063.
[5] Zhao, Lianhe, Wang, Jiajia, Li, Yanyan, Song, Tingrui, Wu, Yang, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Pei, Dong, Zheng, Yu, Huang, Jianqin, Xu, Mingqing, Chen, Runsheng, Zhao, Yi, He, Shunmin. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D165-D171, http://dx.doi.org/10.1093/nar/gkaa1046.
[6] Haitao Luo, Dechao Bu, Lijuan Shao, Yang Li, Liang Sun, Ce Wang, Jing Wang, Wei Yang, Xiaofei Yang, Jun Dong, Yi Zhao, Furong Li. Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity. Genomics, Proteomics & Bioinformatics[J]. 2021, http://dx.doi.org/10.1016/j.gpb.2021.02.006.
[7] Dechao Bu, Yan Xia, JiaYuan Zhang, Wanchen Cao, Peipei Huo, Zhihao Wang, Zihao He, Linyi Ding, Yang Wu, Shan Zhang, Kai Gao, He Yu, Tiegang Liu, Xia Ding, Xiaohong Gu, Yi Zhao. FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm. Computational and Structural Biotechnology Journal[J]. 2021, 19: 62-71, [8] Zhang, Junpei, Zhang, Wenting, Ji, Feiyang, Qiu, Jie, Song, Xiaobo, Bu, Dechao, Pan, Gang, Ma, Qingguo, Chen, Jiaxin, Huang, Ruimin, Chang, Yingying, Pei, Dong. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplication. PLANT BIOTECHNOLOGY JOURNALnull. 2020, 18(9): 1848-1850, http://dx.doi.org/10.1111/pbi.13350.
[9] 韓自強, 卜德超, 張策, 吳桂鑫, 鄒玉寶, 王水雲, 宋雷, 趙屹, 王繼征. 肥厚型心肌病可變剪接圖譜分析. 中國分子心臟病學雜誌. 2020, 20(1): 3249-3254, http://lib.cqvip.com/Qikan/Article/Detail?id=7101502439.
[10] Ma, Qingguo, Bu, Dechao, Zhang, Junpei, Wu, Yang, Pei, Dong. The Transcriptome Landscape of Walnut Interspecies Hybrid (Juglans hindsii x Juglans regia) and Regulation of Cambial Activity in Relation to Grafting. FRONTIERS IN GENETICS[J]. 2019, 10: https://www.webofscience.com/wos/woscc/full-record/WOS:000472535600001.
[11] Li, Lin, Bu, Dechao, Zhao, Yi. CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation. FEBS LETTERS[J]. 2019, 593(11): 1179-1189, https://www.webofscience.com/wos/woscc/full-record/WOS:000470956700005.
[12] Wu, Yang, Zhang, Feilong, Yang, Kuo, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Hu, Hairuo, Gao, Kuo, Wang, Wei, Zhou, Xuezhong, Zhao, Yi, Chen, Jianxin. SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D1110-D1117, https://www.webofscience.com/wos/woscc/full-record/WOS:000462587400152.
[13] Luo, Haitao, Bu, Dechao, Sun, Liang, Fang, Shuangsang, Liu, Zhiyong, Zhao, Yi. Identification and function annotation of long intervening noncoding RNAs. BRIEFINGS IN BIOINFORMATICS[J]. 2017, 18(5): 789-797, https://www.webofscience.com/wos/woscc/full-record/WOS:000411516400008.
[14] Wang, Renzhi, Yang, Yakun, Sheng, Miaomiao, Bu, Dechao, Huang, Fengming, Liu, Xiaohai, Zhou, Cuiqi, Dai, Congxin, Sun, Bowen, Zhu, Jindong, Qiao, Yi, Yao, Yong, Zhu, Huijuan, Lu, Lin, Pan, Hui, Feng, Ming, Deng, Kan, Xing, Bing, Lian, Wei, Zhao, Yi, Jiang, Chengyu. Phenotype-Genotype Association Analysis of ACTH-Secreting Pituitary Adenoma and Its Molecular Link to Patient Osteoporosis. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES[J]. 2016, 17(10): https://doaj.org/article/d4aaf1cc955a4c27a7fb296a6ae60663.
[15] Zhao, Yi, Li, Hui, Fang, Shuangsang, Kang, Yue, Wu, Wei, Hao, Yajing, Li, Ziyang, Bu, Dechao, Sun, Ninghui, Zhang, Michael Q, Chen, Runsheng. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2016, 44(D1): D203-D208, https://www.webofscience.com/wos/woscc/full-record/WOS:000371261700027.
[16] 卜德超, 羅海濤, 焦飛, 方雙桑, 譚程夫, 劉志勇, 趙屹. 哺乳動物長鏈非編碼RNA的進化注釋. 中國科學. 生命科學[J]. 2016, 46(2): 167-177, [17] Bu DeChao, Luo HaiTao, Jiao Fei, Fang ShuangSang, Tan ChengFu, Liu ZhiYong, Zhao Yi. Evolutionary annotation of conserved long non-coding RNAs in major mammalian species. SCIENCE CHINA-LIFE SCIENCES[J]. 2015, 58(8): 787-798, https://www.webofscience.com/wos/woscc/full-record/WOS:000359146800008.
[18] 卜德超. 基於高通量數據的長非編碼RNA鑑定和進化的算法研究. 2015, [19] 趙屹, 卜德超. 當生物醫學遇上大數據. 北大商業評論. 2015, 74-79, http://lib.cqvip.com/Qikan/Article/Detail?id=664365125.
[20] Yang, Yakun, Sheng, Miaomiao, Huang, Fengming, Bu, Dechao, Liu, Xiaohai, Yao, Yong, Dai, Congxin, Sun, Bowen, Zhu, Jindong, Jiao, Yonghui, Wei, Zhenqing, Zhu, Huijuan, Lu, Lin, Zhao, Yi, Jiang, Chengyu, Wang, Renzhi. Downregulation of Insulin-like growth factor binding protein 6 is associated with ACTH-secreting pituitary adenoma growth. PITUITARY[J]. 2014, 17(6): 505-513, https://www.webofscience.com/wos/woscc/full-record/WOS:000346963100003.
[21] 陳潤生. NONCODEv4: exploring the world of long non-coding RNA genes. NUCLEIC ACIDS RESEARCH[J]. 2014, 42(30): D98-D103, https://www.webofscience.com/wos/woscc/full-record/WOS:000331139800016.
[22] 陳潤生. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(17): e166-e166, [23] 陳潤生. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(17): e166-e166, [24] Luo, Haitao, Sun, Silong, Li, Ping, Bu, Dechao, Cao, Haiming, Zhao, Yi. Comprehensive Characterization of 10,571 Mouse Large Intergenic Noncoding RNAs from Whole Transcriptome Sequencing. PLOS ONE[J]. 2013, 8(8): https://doaj.org/article/c4f72f03442943a6b0cd00606eb2e56b.
[25] Zhang Kun, Wang LeHeng, Chi Hao, Bu DeChao, Yuan ZuoFei, Liu Chao, Fan ShengBo, Chen HaiFeng, Zeng WenFeng, Luo HaiTao, Sun RuiXiang, He SiMin, Xie Lu, Zhao Yi. Proteogenomics: Improving Genomes Annotation by Proteomics. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS[J]. 2013, 40(4): 297-308, https://www.webofscience.com/wos/woscc/full-record/WOS:000318059500001.
[26] Sun Liang, Luo HaiTao, Liao Qi, Bu DeChao, Zhao GuoGuang, Liu ChangNing, Liu YuanNing, Zhao Yi. Systematic study of human long intergenic non-coding RNAs and their impact on cancer. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(4): 324-334, https://www.webofscience.com/wos/woscc/full-record/WOS:000317610200005.
[27] Zhang Kun, Wang LeHeng, Chi Hao, Bu DeChao, Yuan ZuoFei, Liu Chao, Fan ShengBo, Chen HaiFeng, Zeng WenFeng, Luo HaiTao, Sun RuiXiang, He SiMin, Xie Lu, Zhao Yi. Proteogenomics: Improving Genomes Annotation by Proteomics. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS[J]. 2013, 40(4): 297-308, https://www.webofscience.com/wos/woscc/full-record/WOS:000318059500001.
[28] 趙國光, 焦飛, 廖奇, 羅海濤, 李慧, 孫亮, 卜德超, 余鯤濤, 趙屹, 陳潤生. 基於轉錄組測序在人類全基因組內鑑定與癌症相關的polyadenylation和non-polyadenylation RNA. 中國科學. 生命科學[J]. 2013, 43(5): 376-386, [29] 陳潤生. Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(38): 503-512, http://www.irgrid.ac.cn/handle/1471x/756539.
[30] 陳潤生. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(41): http://www.irgrid.ac.cn/handle/1471x/756478.
[31] 陳潤生. Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(38): 503-512, http://www.irgrid.ac.cn/handle/1471x/756539.
[32] 陳潤生. CloudLCA: finding the lowest common ancestor in metagenome analysis using cloud computing. PROTEIN & CELL[J]. 2012, 3(50): 148-152, http://www.irgrid.ac.cn/handle/1471x/756738.
[33] 陳潤生. NONCODE v3.0: integrative annotation of long noncoding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2012, 40(51): D210-D215, http://www.irgrid.ac.cn/handle/1471x/756876.
[34] Liao, Qi, Liu, Changning, Yuan, Xiongying, Kang, Shuli, Miao, Ruoyu, Xiao, Hui, Zhao, Guoguang, Luo, Haitao, Bu, Dechao, Zhao, Haitao, Skogerbo, Geir, Wu, Zhongdao, Zhao, Yi. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. NUCLEIC ACIDS RESEARCH[J]. 2011, 39(9): 3864-3878, https://www.webofscience.com/wos/woscc/full-record/WOS:000290589500037.
[35] 陳潤生. ncFANs: a web server for functional annotation of long non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2011, 39(54): W118-W124, http://www.irgrid.ac.cn/handle/1471x/757406.
所獲榮譽
[1] 第一批國家中醫藥傳承創新團隊（全國10家）--中醫疫病學多學科交叉人才培養對象（全國9名）。
[2] 浙江省生物信息學會自然科學獎一等獎。
社會任職
2022-02-01-今,Frontiers in Bioengineering and Biotechnology, Review Editor
2021-10-01-2023-12-31,中華中醫學會感染病分會, 第六屆委員會青年委員
2021-02-01-今,Frontiers in Genetics, Review Editor
2020-12-22-2021-12-31,中國抗癌協會腫瘤標誌專業委員會, 腫瘤多學科診斷(MDD)協作組委員
