1. Zhu T, dos Reis M, Yang Z. 2015. Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci. Systematic Biology 64:267-280.
2. dos Reis M, Zhu T, Yang Z. 2014. The impact of the rate prior on Bayesian estimation of divergence times with multiple loci. Systematic Biology, 63:555-565.
3. Yang Z, Rannala B. 2014. Unguided species delimitation using DNA sequence data from multiple loci. Molecular Biology and Evolution, 31:3125-3135.
4. Zhang C, Rannala B, Yang Z. 2014. Bayesian species delimitation can be robust to guide tree inference errors. Systematic Biology, 63:993-1004.
5. Z. Yang, Molecular Evolution: A Statistical Approach (Oxford University Press, Oxford, England, 2014), 512 pages.
6. Yang Z., Rannala B. 2012. Molecular phylogenetics: principles and practice. Nature Review Genetics 13: 303-314.
7. Yang Z. and B. Rannala . 2010. Bayesian species delimitation using multilocus sequence data. PNAS 107: 9264-9269.
8. Yang, Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
9. Yang, Z., W.S.W. Wong, and R. Nielsen. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118.