霍紅衛，西安電子科技大學計算機學院教授、博士生導師。先後於西北大學獲數學學士學位，西安電子科技大學分別獲計算機軟體與理論及電子工程碩士和博士學位。受到Jeffrey S. Vitter教授邀請，曾在堪薩斯大學工作一年。IEEE高級會員（Senior Member）。中國計算機學會高級會員。
基本介紹
- 中文名：霍紅衛
- 國籍：中國
- 主要成就：西安電子科技大學計算機學院教授
- 性別：女
人物簡介,個人簡歷,論文,
人物簡介
大數據算法理論與套用（Lab of Algorithm Theories and Applications for Big Data）實驗室主任。主持國家自然科學基金、預研、南京大學計算機軟體新技術國家重點實驗室、華為基金等多項科研項目。主要研究方向包括算法理論，壓縮索引與檢索，壓縮數據結構，壓縮機器學習，基因組數據壓縮與模式搜尋，圖資料庫壓縮索引與相似性搜尋，並行與分散式算法，外存算法，算法工程。在《Knowledge-Based Systems》,《IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)》, IEEE Data Compression Conference (DCC), ACM-SIAM Algorithm Engineering and Experiments (ALENEX), Proceedings of the International Symposium on String Processing and Information Retrieval (SPIRE)等國內外重要刊物和會議發表學術論文90餘篇。出版算法有關的著作6本。
個人簡歷
1986年，獲得西北大學數學學士學位
1991年，獲得西安電子科技大學計算機軟體與理論專業碩士學位
2000年，獲得西安電子科技大學信號與信息處理專業博士學位
2001年，西安電子科技大學教授
2007年，訪問MIT，Harvard University和JHU
2013-2014，訪問教授，The University of Kansas
論文
1.X. Chen, H. Huo, J. Huan, and Jeffrey S. Vitter, MSQ-Index: A Succinct Index for Fast Graph Similarity Search, arxiv.org/abs/1612.09155.
2. Hongwei Huo, Xiaoyang Chen, Yuhao Zhao, Xiaojin Zhu, and Jeffrey S. Vitter, Practical Succinct Text Indexes in External Memory, Proceedings of the IEEE Data Compression Conference (DCC), Snowbird, USA, March 27 - March 30, 2018.
3. Zhize Li, Jian Li and Hongwei Huo, Optimal In-Place Suffix Sorting, Proceedings of the IEEE Data Compression Conference (DCC), Snowbird, USA, March 27 - March 30, 2018.
4. Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey S. Vitter, Efficient Graph Similarity Search in External Memory, IEEE Access, 5(1): 4551-4560, 2017.
5. Haitao Guo and Hongwei Huo, A New Algorithm for Identifying Cis-regulatory Modules Based on Hidden Markov Model, BioMed Research International, Volume 2017 (2017), Article ID 6274513, 12 pages.
6. Hongwei Huo, Zhigang Sun, Shuangjiang Li, Jeffrey S. Vitter, Xinkun Wang, Qiang Yu and Jun Huan, CS2A: a compressed suffix array-based method for short read alignment, Proceedings of the IEEE Data Compression Conference (DCC), Snowbird, USA, March 29 - April 1, 2016. 271–278.
7. Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey S. Vitter and Jun Huan, RefSelect: a reference sequence selection algorithm for planted (l, d) motif search, BMC Bioinformatics, 17(Suppl 9):266, 2016.
8. Qiang Yu, Hongwei Huo and Dazheng Feng, PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data Sets, BioMed Research International, Volume 2016, Article ID 4986707, 10 pages.
9. 霍紅衛，陳曉陽，陳龍剛，於強，高階熵壓縮的全文自索引，計算機學報，39(12):2494–2511, 2016.
10. 郭海濤, 霍紅衛, 於強, SegHMC: 一種基於segmental HMM模型的順式調控模組識別算法，自動化學報, 42(11):1718–1731， 2016.
11. Qiang Yu, Hongwei Huo, Jeffrey S. Vitter, Jun Huan and Yakov Nekrich, An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 12(2):384–397, March/April 2015.
12. Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey S. Vitter, and Jun Huan, An Efficient Algorithm for Discovering Motifs in Large DNA Data Sets, IEEE Transactions on NanoBioScience, 14(5):535–544, 2015.
13. Hongwei Huo, Longgang Chen, Heng Zhao, Jeffrey S. Vitter, Yakov Nekrich, and Qiang Yu. A Data-Aware FM-index. ACM-SIAM Proceedings of the 17th Meeting on Algorithm Engineering and Experiments (ALENEX), San Diego, California, USA, 2015
14. Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey S. Vitter, and Jun Huan, An Efficient Motif Finding Algorithm for Large DNA Data Sets, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Belfast, UK, 2014. Student Travel Award.
15. Hongwei Huo, Longgang Chen, Jeffrey S. Vitter, and Yakov Nekrich, A Practical Implementation of Compressed Suffix Arrays with Applications to Self-indexing, Data Compression Conference (DCC), Snowbird, USA, 2014, 292–301. http://www.ittc.ku.edu/~jsv/Papers/HCV13.PracticalCSAImplementation.pdf
16. Yipu Zhang, Hongwei Huo, and Qiang Yu, A Heuristic Cluster-based EM Algorithm for the Planted (l, d) Problem, J Bioinform Comput Biol., 11(4):1350009, 2013.
17. Qiang Yu, Hongwei Huo, Yipu Zhang, Hongzhi Guo, and Haitao Guo, PairMotif+: A Fast and Effective Algorithm for De Novo Motif Discovery in DNA sequences, International Journal of Biological Sciences, 9(4):412-424, 2013.
18. Qiang Yu, Hongwei Huo, Jeffrey S. Vitter, Jun Huan and Yakov Nekrich, StemFinder: An Efficient Algorithm for Searching Motif Stems over Large Alphabets, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shanghai, pages 473-476, 2013.
19. Yu Q, Huo H, Zhang Y, and Guo H, PairMotif: A New Pattern-driven Algorithm for Planted (l, d) DNA Motif Search, PLoS ONE, 7(10): e48442, 2012.
20. 霍紅衛, 郭丹丹, 於強, 張懿璞, 牛偉, (l, d)-模體識別問題的遺傳最佳化算法, 計算機學報, 35(7):1429-1439, 2012.
21. Hongwei Huo, Shuai Lin, Qiang Yu, Yipu Zhang, and V. Stojkovic, A MapReduce-based Algorithm for Motif Search, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Shanghai, pages 2052-2060, 2012.
22. Hongwei Huo, Zhenhua Zhao, V. Stojkovic, Optimizing Genetic Algorithm for Motif Discovery, Mathematical and Computer Modelling, 52(11–12): 2011-2020, 2010.
