1. JinShui Yang , Ehsan Rasa , Prapakorn Tantayotai , Kate M. Scow , HongLi Yuan ,
Krassimira R. Hristova. Mathematical model of Chlorella minutissima UTEX2341 growth and lipid production under photoheterotrophic fermentation conditions. Bioresource Technology, 2011，102：3077-3082
2．Shu-Juan Cao, Jian-Hang Qu, Hong-Li Yuan* and Bao-Zhen Li. Salsuginibacillus halophilus sp. nov., a halophilic bacterium isolated from a soda lake. International Journal of Systematic and Evolutionary Microbiology, 2010, 60: 1339–1343
3. Shu-Juan Cao, Chun-Ping Deng, Bao-Zhen Li, Xiu-Qin Dong and Hong-Li Yuan*.Cloacibacterium rupense sp. nov., isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology, 2010, 60: 2023–2026
4. Nan Nan Zhang , Yan Mei Sun , Long Li ,En Tao Wang ,Wen Xin Chen , Hong Li Yuan*. Effects of intercropping and Rhizobium inoculation on yield and rhizosphere bacterial community of faba bean
5．Nan Nan Zhang, Jian Hang Qu, Hong Li Yuan*, Yan Mei Sun and Jin Shui Yang. Flavihumibacter petaseus gen. nov., sp. nov.,isolated from soil of a subtropical rainforest.International Journal of Systematic and Evolutionary Microbiology, 2010，60：1609–1612
6. Jinshui Yang, Weijie Liu, Baozhen Li, Hongli Yuan*, Meiping Tong, Jinsong Gao. Application of a novel backwashing process in upflow biological aerated filter. Journal of Environmental Sciences, 2010, 22(3):362-366
2009：
7. Yan Mei Sun, Nan Nan Zhang, En Tao Wang, Hong Li Yuan*，Jin Shui Yang , Wen Xin
Chen. Influence of intercropping and intercropping plus rhizobial inoculation on microbial activity and community composition in rhizosphere of alfalfa (Medicago sativa L.) and Siberianwild rye (Elymussibiricus L.) . FEMS Microbiol Ecol, 2009， 70:218–226
8. Hai-Feng Li, Jian-Hang Qu, Jin-Shui Yang, Zhi-Jian Li and Hong-Li Yuan* . Paracoccus
chinensis sp. nov., isolated from sediment of a reservoir. International Journal of Systematic and Evolutionary Microbiology, 2009: 59: 2670–2674
9. Weijie Liu, Kai Wang, Baozhen Li, Hongli Yuan, Jinshui Yang. Production and characterization of an intracellular bioflocculant by Chryseobacterium daeguense W6 cultured in low nutrition medium. Bioresource Technology, 2010，101 ：1044–1048
10. Weijie Liu, Hongli Yuan, Jinshui Yang, Baozhen Li. Production and Characterization of Bioflocculant from Biologically Aerated Filter Backwashed Sludge and Its Application in Wastewater Treatment. Bioresource Technology, 2009, 100: 2629-2632.
11. Lianhua Dong, Ana Lucia Cordova-Kreylos, Jinshui Yang, Hongli Yuan*, Kate M. Scow. Humic acids buffer the effects of urea on soil ammonia oxidizers and potential nitrification. Soil Biology & Biochemistry, 2009, 41: 1612–1621
12. Jian-Hang Qu, Hong-Li Yuan*, Hai-Feng Li, Chun-Ping DengFlavobacterium cauense sp. nov., isolated from sediment of a eutrophic lake. International Journal of Systematic and Evolutionary Microbiology, 2009， 59:2666–2669
13. Jian-Hang Qu, Hong-Li Yuan*, Jin-Shui Yang, Hai-Feng Li and Nan Chen.Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake. International Journal of Systematic and Evolutionary Microbiology, 2009, 59:1153–1157
14. LianHua Dong, HongLi Yuan* . Nitrogen Incorporation into Lignite Humic Acids during Microbial Degradation. Geomicrobiology Journal, 2009, 26:484–490
2008：
15. Zhiwei Lv, JinShui Yang, EnTao Wang, HongLi Yuan*. Characterization of extracellular and substrate-bound cellulases from a mesophilic sugarcane bagasse-degrading microbial community. Process Biochemistry， 2008，43:1467-1472
16. Zhiwei Lv, Jinshui Yang, Hongli Yuan*. Production, purification and characterization of an alkaliphilic endo-β-1,4-xylanase from a microbial community EMSD5. Enzyme and Microbial Technology，2008，43: 343–348
17. Zhijian li, Hongli Yuan*. Responses of Rhodotorula sp Y11 to cadmium. Biomentals, 2008，21 (6): 613-621
18. ShuJuan Cao, JianHang Qu, JinShui Yang, Qing Sun, HongLi Yuan*. Halolactibacillus alkaliphilus sp. nov., a moderately alkaliphilic and halophilic bacterium isolated from a soda lake in Inner Mongolia, China, and emended description of the genus Halolactibacillus. International Journal of Systematic and Evolutionary Microbiology，2008, 58：2169–2173
19. JianHang Qu, HaiFeng Li, JinShui Yang, HongLi Yuan*. Flavobacterium cheniae sp. nov., isolated from sediment of a eutrophic reservoir. International Journal of Systematic and Evolutionary Microbiology，2008, 58：2186–2190
20. LianHua Dong, JinShui Yang, HongLi Yuan*, EnTao Wang, WenXin Chen. Chemical characteristics and influences of two fractions of Chinese lignite humic acids on urease. European Journal of Soil Biology. 2008, 44:166-171.
21. Jian Hang Qu, Hong Li Yuan*, En Tao Wang, Cui Li, Huai Zeng Huang. Bacterial diversity in sediments of the eutrophic Guanting Reservoir, China, estimated by analyses of 16S rDNA sequence. Biodiversity and Conservation, 2008, 17: 1667-1683
22. Jian-Hang Qu , Hong-Li Yuan*. Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir. International Journal of Systematic and Evolutionary Microbiology, 2008, 58: 2191-2194.
Deng, Y., Deng, C., Yang, J., Li, B., Wang, E., and Yuan, H*. Novel Butane- Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field. Frontiers in microbiology, 2018, 9, 1576
Li, W., Yang, J., Zhang, D., Li, B., Wang, E., and Yuan, H*. Concentration and Community of Airborne Bacteria in Response to Cyclical Haze Events During the Fall and Midwinter in Beijing, China. Frontiers in microbiology,2018, 9, 1741
Yi Yang, Jinshui Yang, Jiawen Liu, Ruonan Wang, Liang Liu, Fengqin Wang, Hongli Yuan*. The composition of accessory enzymes of Penicillium chrysogenum P33 revealed by secretome and synergistic effects with commercial cellulase on lignocellulose hydrolysis. Bioresource Technology, 2018, 257: 54–61
Yi Yang, Jinshui Yang, Baozhen Li, Entao Wang, Hongli Yuan*. An esterase from Penicillium decumbens P6 involved in lignite depolymerization. Fuel, 2018, 214:416–422
Yi Yang, Ning Zhu, Jinshui Yang, Yujian Lin, Jiawen Liu, Ruonan Wang, Fengqin Wang, Hongli Yuan*. A novel bifunctional acetyl xylan esterase arabinofuranosidase from Penicillium chrysogenum P33 enhances enzymatic hydrolysis of lignocellulose. Microbial Cell Factories, 2017,16: 166(1-12)
Cong Liu, Jinshui Yang, Liang Liu, Baozhen Li, Hongli Yuan*, Weijie Liu. Sodium lactate negatively regulates biofilm formation of Shewanella putrefaciens CN32 via a three-component regulatory system (LrbS-LrbA-LrbR).Applied and Environmental Microbiology,2017,83 (14)：e00712-17
7) Jiawen Liu, Ning Zhu, Jinshui Yang, Yi Yang, Ruonan Wang, Liang Liu and Hongli Yuan*. Lipopeptide produced from Bacillus sp. W112 improves the hydrolysis of lignocellulose by specifically reducing non-productive binding of cellulases with and without CBMs. Biotechnology for Biofuels, 2017,10:301
8) Deng, Chunping, Yu, Xuejian, Yang, Jinshui, Li, Baozhen, Sun, Weilin, Yuan, Hongli.* Universal Indicators for Oil and Gas Prospecting Based on Bacterial Communities Shaped by Light-Hydrocarbon Microseepage in China. Journal of microbiology and biotechnology, 2016, 26:1320-1332.
9) Ying Zhang, Chunping Deng, Bin Shen, Jinshui Yang, Entao Wang, Hongli Yuan*. Syntrophic Interactions Within a Butane-Oxidizing Bacterial Consortium Isolated from Puguang Gas Field in China.Microbial Ecology, 2016, DOI 10.1007s00248-016-0799-20.
10）Ning Zhu, Jinshui Yang, Lei Ji, Jiawen Liu, Yi Yang, Hongli* Yuan. Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose. Biotechnology for Biofuels，2016，9:243.
11) JinShui Yang ，FengLong Yang，Yang Yang，GuanLan Xing，ChunPing Deng，YaTing Shen，LiQiang Luo，BaoZhen Li， HongLi Yuan*，A proposal of“core enzyme” bioindicator in long-term Pb-Zn ore pollution areas based on topsoil property analysis，Environmental Pollution，2016，213：760-769.
12) Zhu, Ning，Liu, Jiawen，Yang, Jinshui，Lin, Yujian，Yang, Yi，Ji, Lei，Li, Meng， Yuan, Hongli*，Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system. Biotechnology for Biofuels，2016，9:42.
13) Li, Xiaolong，Luo, Lijin，Yang, Jinshui，Li, Baozhen， Yuan, Hongli*，Mechanisms for Solubilization of Various Insoluble Phosphates and Activation of Immobilized Phosphates in Different Soils by an Efficient and Salinity-Tolerant Aspergillus niger Strain An2.Applied Biochemistry and Biotechnology，2015，175（5）：2755-2768.
14) Gao, Tong Guo，Xu, Yuan Yuan，Jiang, Feng，Li, Bao Zhen，Yang, Jin Shui，Wang, En Tao， Yuan, Hong Li*，Nodulation Characterization and Proteomic Profiling of Bradyrhizobium liaoningense CCBAU05525 in Response to Water-Soluble Humic Materials，Scientific Reports，2015，5.
15) Chen, Nan，Yu, Xue-Jian，Yang, Jin-Shui，Wang, En-Tao，Li, Bao-Zhen， Yuan, Hong-Li*，Novosphingobium tardum sp nov., isolated from sediment of a freshwater lake. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology，2015，108（1）：51-57.
16) Li, Chune，Yang, Jinshui，Wang, Xin，Wang, Entao，Li, Baozhen，He, Ruoxue， Yuan, Hongli*.Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a phosphate accumulating bacterium Pseudomonas stutzeri YG-24. Bioresource Technology，2015，182：18-25.
17) Chen, Nan，Yang, Jin-Shui，Qu, Jiang-Hang，Li, Hai-Feng，Liu, Wei-Jie，Li, Bao-Zhen，Wang, En Tao， Yuan, Hong-Li*，Sediment prokaryote communities in different sites of eutrophic Lake Taihu and their interactions with environmental factors. World Journal of Microbiology and Biotechnology，2015，31（6）：883-896.
18) Zhang, Nan Nan，Sun, Yan Mei，Wang, En Tao，Yang, Jin Shui， Yuan, Hong Li*，Scow, Kate M.，Effects of intercropping and Rhizobial inoculation on the ammonia-oxidizing microorganisms in rhizospheres of maize and faba bean plants. Applied Soil Ecology，2015，85：76-85.
19) Ji, Lei，Yang, Jinshui，Fan, Hua，Yang, Yi，Li, Baozhen，Yu, Xuejian，Zhu, Ning， Yuan, Hongli*，Synergy of crude enzyme cocktail from cold-adapted Cladosporium cladosporioides Ch2-2 with commercial xylanase achieving high sugars yield at low cost. Biotechnology for Biofuels，2014，7.
20) Jin Shui Yang， Hong Li Yuan*，Baozhen Li，Identification and biodegradation potential of two newly isolated hydrocarbon-degradating microorganisms. Journal of Chemical and Pharmaceutical Research，2014，6（9）：438-443.
