孟憲文(山東農業大學園藝學院副教授)

孟憲文，博士，副教授，碩士研究生導師。2013年獲哈爾濱醫科大學生物信息學學士學位，2018年獲浙江大學生物信息學博士學位。2018年8月以來，在山東農業大學農學院任教。已經在SCI期刊上發表20餘篇文章，其中第一作者6篇，包括Bioinformatics、Briefings in Bioinformatics、Nucleic Acids Research等生物信息學領域國際知名期刊。

基本介紹

• 中文名：孟憲文
• 國籍：中國
• 畢業院校：哈爾濱醫科大學、浙江大學
• 學位/學歷：博士

研究方向

1.作物基因組學和生物信息學

2.植物非編碼RNA作用機制

3.生物信息學平台和軟體的開發

4.利用多組學數據研究植物抗逆機理

發表文章

1. Zhang, P., Liu, Y., Chen, H., Meng, X., Xue, J. and Chen, M., 2020. CircPlant: an integrated tool for circRNA detection and functional prediction in plants. Genomics, Proteomics & Bioinformatics, accepted.
2. Chen, Q., Meng, X., Liao, Q. and Chen, M., 2019. Versatile interactions and bioinformatics analysis of noncoding RNAs. Briefings in Bioinformatics, 20 (5), 1781-1794.
3. Ahsan, A., Monir, M., Meng, X., Rahaman, M., Chen, H. and Chen, M., 2018. Identification epistasis loci underlying rice flowering time by controlling population stratification and polygenic effect. DNA Research, 26 (2), 119-130.
4. Meng, X., Hu, D., Zhang, P., Chen, Q. and Chen, M., 2019. CircFunBase: a database for functional circular RNAs. Database, 2019.
5. Li, X., Meng, X., Wei, C., Zhou, Y., Huang, H. and Chen, M., 2018. Dissecting LncRNA roles in renal cell carcinoma metastasis and characterizing genomic heterogeneity by single-cell RNA-seq. Molecular Cancer Research, 16(12), 1879-1888.
6. Meng, X., Zhang, P., Chen, Q., Wang, J. and Chen, M., 2018. Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development. BMC Genomics, 19(1),607.
7. Jin, D., Meng, X., Wang, Y., Wang, J., Zhao, Y. and Chen, M., 2018. Computational investigation of small RNAs in the establishment of root nodules and arbuscular mycorrhiza in leguminous plants. Science China Life Sciences, pp.1-12.
8. Meng, X., Chen, Q., Zhang, P. and Chen, M., 2017. CircPro: an integrated tool for the identification of circRNAs with protein-coding potential. Bioinformatics, 33(20), pp.3314-3316.
9. Wang, J., Meng, X., Dobrovolskaya, O.B., Orlov, Y.L. and Chen, M., 2017. Non-coding RNAs and Their Roles in Stress Response in Plants. Genomics, Proteomics & Bioinformatics, 15(5), pp.301-312.
10. Li, H., Zhong, A., Li, S., Meng, X., Wang, X., Xu, F. and Lai, M., 2017. The integrated pathway of TGFβ/Snail with TNFα/NFκB may facilitate the tumor-stroma interaction in the EMT process and colorectal cancer prognosis. Scientific Reports, 7(1), p.4915.
11. Meng, X., Li, X., Zhang, P., Wang, J., Zhou, Y. and Chen, M., 2016. Circular RNA: an emerging key player in RNA world. Briefings in Bioinformatics, 18(4), pp.547-557.
12. Yuan, C., Meng, X.（共一）, Li, X., Illing, N., Ingle, R.A., Wang, J. and Chen, M., 2017. PceRBase: a database of plant competing endogenous RNA. Nucleic Acids Research, 45(D1), pp.D1009-D1014.
13. Zhang, P., Meng, X., Chen, H., Liu, Y., Xue, J., Zhou, Y. and Chen, M., 2017. PlantCircNet: a database for plant circRNA–miRNA–mRNA regulatory networks. Database, doi: 10.1093/database/bax089.
14. Wang, J., Zhou, Y., Li, X., Meng, X., Fan, M., Chen, H., Xue, J. and Chen, M., 2017. Genome-wide analysis of the distinct types of chromatin interactions in Arabidopsis thaliana. Plant and Cell Physiology, 58(1), pp.57-70.
15. Wang, J., Meng, X., Chen, H., Yuan, C., Li, X., Zhou, Y. and Chen, M., 2016. Exploring the mechanisms of genome-wide long-range interactions: interpreting chromosome organization. Briefings in Functional Genomics, 15(5), pp.385-395.
16. Wang, J., Meng, X., Yuan, C., Harrison, A.P. and Chen, M., 2015. The roles of cross-talk epigenetic patterns in Arabidopsis thaliana. Briefings in Functional Genomics, 15(4), pp.278-287.
17. Meng, X., Wang, J., Yuan, C., Li, X., Zhou, Y., Hofestädt, R. and Chen, M., 2015. CancerNet: a database for decoding multilevel molecular interactions across diverse cancer types. Oncogenesis, 4(12), p.e177.
18. Yuan, C., Wang, J., Harrison, A.P., Meng, X., Chen, D. and Chen, M., 2015. Genome-wide view of natural antisense transcripts in Arabidopsis thaliana. DNA Research, 22(3), pp.233-243.