何光明，博士，北京大學生命科學學院副研究員。
基本介紹
- 中文名：何光明
- 職業：副研究員
人物履歷,主要成就,
人物履歷
2010.7 - 至今 , 副研究員 , 北京大學
2009.1 - 2010.6 , 博士後 , 美國耶魯大學
2006.8 - 2008.12 , 研究助理 , 北京生命科學研究所
2003.8 - 2006.7 , 理學博士 , 遺傳學 , 復旦大學
2000.9 - 2003.7 , 農學碩士 , 作物遺傳育種 , 中國農業大學
1994.7 - 2000.8 , 研究實習員 , 湖北省農業科學院
1990.9 - 1994.6 , 理學學士 , 生物技術 , 東北農業大學
主要成就
發表學術論文30多篇（*corresponding authors通訊作者）：
33. Wang, X., Yang, M., Ren, D., Terzaghi, W., Deng, X. W.* and He, G.* (2019). Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis. Plant J 97, 555-570.
33. Wang, X., Yang, M., Ren, D., Terzaghi, W., Deng, X. W.* and He, G.* (2019). Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis. Plant J 97, 555-570.
32. Ren, D., Wang, X., Yang, M., Yang, L., He, G.* and Deng, X. W.* (2019). A new regulator of seed size control in Arabidopsis identified by a genome-wide association study. New Phytol 222, 895-906.
31. He, G., and Deng, X.W.* (2018). Death Signal Transduction: Chloroplast-to-Mitochondrion Communication Regulates Programmed Cell Death in Plants (in Chinese). Chinese Bulletin of Botany 53, 1-4.
30. Yang, H., Wang, X., Wei, Y., Deng, Z., Liu, H., Chen, J., Dai, L., Xia, Z., He, G.* and Li, D.* (2018). Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings. BMC Plant Biol 18, 10.
29. Yang, M., Wang, X., Ren, D., Huang, H., Xu, M., He, G.*, and Deng, X.W.* (2017). Genomic architecture of biomass heterosis in Arabidopsis. Proc Natl Acad Sci U S A 114, 8101-8106.
28. Li, D.*, Wang, X., Deng, Z., Liu, H., Yang, H., and He, G.* (2016). Transcriptome analyses reveal molecular mechanism underlying tapping panel dryness of rubber tree (Hevea brasiliensis). Sci Rep 6, 23540.
27. He, G.*, He, H., and Deng, X.W.* (2016). The transcriptomic basis of heterosis in rice (in Chinese). Chin Sci Bull 61, 3850–3857.
26. Yang, M., Wang, X., Huang, H., Ren, D., Su, Y., Zhu, P., Zhu, D., Fan, L., Chen, L., He, G.*, and Deng, X.W.* (2016). Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid. J Integr Plant Biol 58, 466-474.
25. He, G. and Deng, X.W. (2016). On the molecular basis of heterosis in plants: opportunity and challenge (in Chinese). China Basic Science1, 28-34.
24. Yang, L., Li, B., Zheng, X.Y., Li, J., Yang, M., Dong, X.,He, G.*, An, C.*, and Deng, X.W.* (2015). Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids. Nat Commun 6, 7309.
23. Wang, Y., Fan, X., Lin, F., He, G., Terzaghi, W., Zhu, D., and Deng, X.W. (2014). Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light. Proc Natl Acad Sci U S A 111, 10359-10364.
22. Wang, Y., Wang, X., Deng, W., Fan, X., Liu, T.T., He, G., Chen, R., Terzaghi, W., Zhu, D., and Deng, X.W. (2014). Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis. Mol Plant 7, 514-527.
21. He, G.*, Chen, B., Wang, X., Li, X., Li, J., He, H., Yang, M., Lu, L., Qi, Y., and Deng, X.W.* (2013). Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids. Genome Biol 14, R57.
20. He, G., He, H., and Deng, X.W. (2013). Epigenetic variations in plant hybrids and their potential roles in heterosis. J Genet Genomics 40, 205-210.
19. He, G., and Deng, X.W. (2013). Chromatin and Gene Expression Mechanisms in Hybrids. In Polyploid and Hybrid Genomics, John Wiley & Sons, Inc., pp. 323-333.
18. Liu, T.T., Zhu, D., Chen, W., Deng, W., He, H.,He, G., Bai, B., Qi, Y., Chen, R., and Deng, X.W. (2013). A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. Mol Plant 6, 830-846.
17. Deng, X.W., Wang, H., Tang, X., Zhou, J., Chen, H., He, G., Chen, L. and Xu, Z. (2013). Hybrid rice breeding welcomes a new era of molecular crop design (in Chinese). Scientia Sinica Vitae 43, 864–868,
16. Shen, H., He, H., Li, J., Chen, W., Wang, X., Guo, L., Peng, Z., He, G., Zhong, S., Qi, Y., Terzaghi, W., and Deng, X.W. (2012). Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell 24, 875-892.
15. He, G., Elling, A.A., and Deng, X.W. (2011). The epigenome and plant development. Annu Rev Plant Biol 62, 411-435.
14. Li, J., Li, G., Gao, S., Martinez, C., He, G., Zhou, Z., Huang, X., Lee, J.H., Zhang, H., Shen, Y., Wang, H., and Deng, X.W. (2010). Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling. Plant Cell 22, 3634-3649.
13. He, G., Zhu, X., Elling, A.A., Chen, L., Wang, X., Guo, L., Liang, M., He, H., Zhang, H., Chen, F., Qi, Y., Chen, R., and Deng, X.W. (2010). Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 22, 17-33.
12. Chen, F., He, G., He, H., Chen, W., Zhu, X., Liang, M., Chen, L., and Deng, X.W. (2010). Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids. J Integr Plant Biol 52, 971-980.
11. Wang, X., Elling, A.A., Li, X., Li, N., Peng, Z., He, G., Sun, H., Qi, Y., Liu, X.S., and Deng, X.W. (2009). Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.Plant Cell 21, 1053-1069.
10. Zha, X., Luo, X., Qian, X., He, G., Yang, M., Li, Y., and Yang, J. (2009). Over-expression of the rice LRK1 gene improves quantitative yield components. Plant Biotechnol J 7, 611-620.
9. Zhang, H., He, H., Chen, L., Li, L., Liang, M., Wang, X., Liu, X., He, G., Chen, R., Ma, L., and Deng, X.W. (2008). A Genome-Wide Transcription Analysis Reveals a Close Correlation of Promoter INDEL Polymorphism and Heterotic Gene Expression in Rice Hybrids. Mol Plant 1, 720-731.
8. Hong, F., Attia, K., Wei, C., Li, K., He, G., Su, W., Zhang, Q., Qian, X., and Yang, J. (2007). Overexpression of the rFCA RNA Recognition Motif Affects Morphologies Modifications in Rice (Oryza sativa L.). Bioscience Rep 27, 225-234.
7. He, G., Luo, X., Tian, F., Li, K., Zhu, Z., Su, W., Qian, X., Fu, Y., Wang, X., Sun, C., and Yang, J. (2006). Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice. Genome Res 16, 618-626.
6. Su, W., Lin, C., Wu, J., Li, K., He, G., Qian, X., Wei, C., and Yang, J. (2006). Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa). Biotechnol Lett 28, 923-927.
5. Su, W., Wu, J., Wei, C., Li, K., He, G., Attla, K., Qian, X., and Yang, J. (2006). Interaction between programmed cell death 5 and calcineurin B-like interacting protein kinase 23 in Oryza sativa. Plant Sci 170, 1150-1155.
4. Li, K., Yang, J., Attia, K., Su, W., He, G., and Qian, X. (2005). Cloning and characterization of OsORC2, a new member of rice origin recognition complex. Biotechnol Lett 27, 1355-1359.
3. Attia, K., Li, K., Wei, C., He, G., Su, W., and Yang, J. (2005). Overexpression of the OsPDCD5 Gene Induces Programmed Cell Death in Rice. J Integr Plant Biol 47, 1115-1122.
2. Attia, K., Li, K., Wei, C., He, G., Su, W., and Yang, J. (2005). Transformation and Functional Expression of the rFCA-RRM2 Gene in Rice. J Integr Plant Biol 47, 823-830.
1. He, G., Sun, C., Fu, Y., Fu, Q., Zhao, K., Wang, C., Zhang, Q., Ling, Z., and Wang, X. (2004). Pyramiding of senescence-inhibition IPT gene and Xa23 for resistance to bacterial blight in rice (Oryza sativa L.) (in Chinese). Acta Genetica Sinica 31, 836-841.
30. Yang, H., Wang, X., Wei, Y., Deng, Z., Liu, H., Chen, J., Dai, L., Xia, Z., He, G.* and Li, D.* (2018). Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings. BMC Plant Biol 18, 10.
29. Yang, M., Wang, X., Ren, D., Huang, H., Xu, M., He, G.*, and Deng, X.W.* (2017). Genomic architecture of biomass heterosis in Arabidopsis. Proc Natl Acad Sci U S A 114, 8101-8106.
28. Li, D.*, Wang, X., Deng, Z., Liu, H., Yang, H., and He, G.* (2016). Transcriptome analyses reveal molecular mechanism underlying tapping panel dryness of rubber tree (Hevea brasiliensis). Sci Rep 6, 23540.
27. He, G.*, He, H., and Deng, X.W.* (2016). The transcriptomic basis of heterosis in rice (in Chinese). Chin Sci Bull 61, 3850–3857.
26. Yang, M., Wang, X., Huang, H., Ren, D., Su, Y., Zhu, P., Zhu, D., Fan, L., Chen, L., He, G.*, and Deng, X.W.* (2016). Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid. J Integr Plant Biol 58, 466-474.
25. He, G. and Deng, X.W. (2016). On the molecular basis of heterosis in plants: opportunity and challenge (in Chinese). China Basic Science1, 28-34.
24. Yang, L., Li, B., Zheng, X.Y., Li, J., Yang, M., Dong, X.,He, G.*, An, C.*, and Deng, X.W.* (2015). Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids. Nat Commun 6, 7309.
23. Wang, Y., Fan, X., Lin, F., He, G., Terzaghi, W., Zhu, D., and Deng, X.W. (2014). Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light. Proc Natl Acad Sci U S A 111, 10359-10364.
22. Wang, Y., Wang, X., Deng, W., Fan, X., Liu, T.T., He, G., Chen, R., Terzaghi, W., Zhu, D., and Deng, X.W. (2014). Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis. Mol Plant 7, 514-527.
21. He, G.*, Chen, B., Wang, X., Li, X., Li, J., He, H., Yang, M., Lu, L., Qi, Y., and Deng, X.W.* (2013). Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids. Genome Biol 14, R57.
20. He, G., He, H., and Deng, X.W. (2013). Epigenetic variations in plant hybrids and their potential roles in heterosis. J Genet Genomics 40, 205-210.
19. He, G., and Deng, X.W. (2013). Chromatin and Gene Expression Mechanisms in Hybrids. In Polyploid and Hybrid Genomics, John Wiley & Sons, Inc., pp. 323-333.
18. Liu, T.T., Zhu, D., Chen, W., Deng, W., He, H.,He, G., Bai, B., Qi, Y., Chen, R., and Deng, X.W. (2013). A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. Mol Plant 6, 830-846.
17. Deng, X.W., Wang, H., Tang, X., Zhou, J., Chen, H., He, G., Chen, L. and Xu, Z. (2013). Hybrid rice breeding welcomes a new era of molecular crop design (in Chinese). Scientia Sinica Vitae 43, 864–868,
16. Shen, H., He, H., Li, J., Chen, W., Wang, X., Guo, L., Peng, Z., He, G., Zhong, S., Qi, Y., Terzaghi, W., and Deng, X.W. (2012). Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell 24, 875-892.
15. He, G., Elling, A.A., and Deng, X.W. (2011). The epigenome and plant development. Annu Rev Plant Biol 62, 411-435.
14. Li, J., Li, G., Gao, S., Martinez, C., He, G., Zhou, Z., Huang, X., Lee, J.H., Zhang, H., Shen, Y., Wang, H., and Deng, X.W. (2010). Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling. Plant Cell 22, 3634-3649.
13. He, G., Zhu, X., Elling, A.A., Chen, L., Wang, X., Guo, L., Liang, M., He, H., Zhang, H., Chen, F., Qi, Y., Chen, R., and Deng, X.W. (2010). Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 22, 17-33.
12. Chen, F., He, G., He, H., Chen, W., Zhu, X., Liang, M., Chen, L., and Deng, X.W. (2010). Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids. J Integr Plant Biol 52, 971-980.
11. Wang, X., Elling, A.A., Li, X., Li, N., Peng, Z., He, G., Sun, H., Qi, Y., Liu, X.S., and Deng, X.W. (2009). Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.Plant Cell 21, 1053-1069.
10. Zha, X., Luo, X., Qian, X., He, G., Yang, M., Li, Y., and Yang, J. (2009). Over-expression of the rice LRK1 gene improves quantitative yield components. Plant Biotechnol J 7, 611-620.
9. Zhang, H., He, H., Chen, L., Li, L., Liang, M., Wang, X., Liu, X., He, G., Chen, R., Ma, L., and Deng, X.W. (2008). A Genome-Wide Transcription Analysis Reveals a Close Correlation of Promoter INDEL Polymorphism and Heterotic Gene Expression in Rice Hybrids. Mol Plant 1, 720-731.
8. Hong, F., Attia, K., Wei, C., Li, K., He, G., Su, W., Zhang, Q., Qian, X., and Yang, J. (2007). Overexpression of the rFCA RNA Recognition Motif Affects Morphologies Modifications in Rice (Oryza sativa L.). Bioscience Rep 27, 225-234.
7. He, G., Luo, X., Tian, F., Li, K., Zhu, Z., Su, W., Qian, X., Fu, Y., Wang, X., Sun, C., and Yang, J. (2006). Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice. Genome Res 16, 618-626.
6. Su, W., Lin, C., Wu, J., Li, K., He, G., Qian, X., Wei, C., and Yang, J. (2006). Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa). Biotechnol Lett 28, 923-927.
5. Su, W., Wu, J., Wei, C., Li, K., He, G., Attla, K., Qian, X., and Yang, J. (2006). Interaction between programmed cell death 5 and calcineurin B-like interacting protein kinase 23 in Oryza sativa. Plant Sci 170, 1150-1155.
4. Li, K., Yang, J., Attia, K., Su, W., He, G., and Qian, X. (2005). Cloning and characterization of OsORC2, a new member of rice origin recognition complex. Biotechnol Lett 27, 1355-1359.
3. Attia, K., Li, K., Wei, C., He, G., Su, W., and Yang, J. (2005). Overexpression of the OsPDCD5 Gene Induces Programmed Cell Death in Rice. J Integr Plant Biol 47, 1115-1122.
2. Attia, K., Li, K., Wei, C., He, G., Su, W., and Yang, J. (2005). Transformation and Functional Expression of the rFCA-RRM2 Gene in Rice. J Integr Plant Biol 47, 823-830.
1. He, G., Sun, C., Fu, Y., Fu, Q., Zhao, K., Wang, C., Zhang, Q., Ling, Z., and Wang, X. (2004). Pyramiding of senescence-inhibition IPT gene and Xa23 for resistance to bacterial blight in rice (Oryza sativa L.) (in Chinese). Acta Genetica Sinica 31, 836-841.
